By Fabian Amman, Stephan H. Bernhart (auth.), João C. Setubal, Nalvo F. Almeida (eds.)
This ebook constitutes the refereed complaints of the eighth Brazilian Symposium on Bioinformatics, BSB 2013, held in Recife, Brazil, in November 2013. The 18 commonplace papers offered have been conscientiously reviewed and chosen for inclusion during this booklet. The papers conceal all facets of bioinformatics and computational biology.
Read or Download Advances in Bioinformatics and Computational Biology: 8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, Proceedings PDF
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Extra resources for Advances in Bioinformatics and Computational Biology: 8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, Proceedings
6. Concatenate the three parts to obtain the scenario S3 = S2ins ++R ++S2del , that is a restricted DCJ-indel scenario sorting A into B. 2 Finding an Optimal Sorting Scenario It can be easily seen that the procedure described in the previous subsection implies a simple algorithm for ﬁnding a restricted DCJ-indel scenario sorting a linear genome A into a linear genome B (Algorithm 1). Complexity. In Algorithm 1, steps 1-4 and 6 can be implemented in linear time, while step 5 takes O(n log n) time, where n = |G | is the number of markers in A , respectively B .
7(12), e1002309 (2011) 17. : RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo. Nucleic Acid Research 40, 8519–8535 (2012) 18. : Action of RORs and their ligands in (patho)physiology. Trends in Endocrinology and Metabolism 23, 619–627 (2012) 19. : RORα, a potental tumor supressor and therapeutic target of breast cancer. Int. J. Mol. Sci. 26, 15755–15766 (2012) 20. : Biopathways representation and simulation on hybrid functional Petri net. In Silico Biol.
4 Conclusions and Perspectives In this paper we have solved an open problem, showing that, even if the indel cost is distinct from and upper bounded by the DCJ cost, the restricted DCJindel distance is equal to the DCJ-indel distance, that can be computed in linear time. This allows the correction for establishing the triangular inequality in the DCJ-indel distance to be automatically extended to the restricted DCJ-indel distance. We have also proposed an algorithm to generate an optimal restricted DCJindel sorting scenario in O(n log n) time.